| POM: |
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<parent>
<artifactId>biojava</artifactId>
<groupId>org.biojava</groupId>
<version>5.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>biojava-genome</artifactId>
<name>biojava-genome</name>
<licenses>
<license>
<name>GNU LGPL v2</name>
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
<distribution>repo</distribution>
</license>
</licenses>
<repositories>
<repository>
<id>biojava-maven-repo</id>
<name>BioJava repository</name>
<url>http://www.biojava.org/download/maven/</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
</repository>
</repositories>
<url>http://maven.apache.org</url>
<build>
<plugins>
<!-- Excluding demo package is required for avoiding namespace clashes (demo package is in all modules) for signing the jar. See issue #387 -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
<excludes>
<exclude>demo/**</exclude>
</excludes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<debug>true</debug>
</configuration>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<configuration>
<filesets>
<fileset>
<directory>${basedir}/src/test/resources/testoutput</directory>
<includes>
<include>**/volvox_all.faa</include>
</includes>
</fileset>
</filesets>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<scope>compile</scope>
<version>24.0-jre</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-core</artifactId>
<version>5.0.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.biojava</groupId>
<artifactId>biojava-alignment</artifactId>
<version>5.0.2</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>junit-addons</groupId>
<artifactId>junit-addons</artifactId>
<version>1.4</version>
<scope>test</scope>
<exclusions>
<exclusion>
<groupId>xerces</groupId>
<artifactId>xmlParserAPIs</artifactId>
</exclusion>
<exclusion>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- logging dependencies (managed by parent pom, don't set versions or scopes here) -->
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<!-- binding for log4j2, scope=runTime set in parent pom -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-slf4j-impl</artifactId>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
</dependency>
</dependencies>
</project>
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